val bam : Formats.bam formatval sam : Formats.sam formatval sort :
?on:[ `name | `position ] ->
Formats.bam Bistro.file ->
Formats.bam Bistro.fileval indexed_bam_of_sam :
Formats.sam Bistro.file ->
[ `indexed_bam ] Bistro.directoryval indexed_bam_of_bam :
Formats.bam Bistro.file ->
[ `indexed_bam ] Bistro.directoryval indexed_bam_to_bam :
[ `indexed_bam ] Bistro.directory ->
Formats.bam Bistro.fileval bam_of_sam : Formats.sam Bistro.file -> Formats.bam Bistro.fileval sam_of_bam : Formats.bam Bistro.file -> Formats.sam Bistro.fileval view :
output:'o format ->
?h:bool ->
?_H:bool ->
?q:int ->
< file_kind : [ `regular ] ; format : [< `bam | `sam ].. > Bistro.file ->
'o Bistro.fileval faidx : Formats.fasta Bistro.file -> [ `indexed_fasta ] Bistro.directoryval fasta_of_indexed_fasta :
[ `indexed_fasta ] Bistro.directory ->
Formats.fasta Bistro.fileval flagstat :
< Bistro.regular_file_t ; format : [< `bam | `sam ].. > Bistro.file ->
Bistro.text Bistro.fileval rmdup :
?single_end:bool ->
[ `indexed_bam ] Bistro.directory ->
Formats.bam Bistro.file