package bistro-bio

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package bistro-bio
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Module Bistro_bio.SamtoolsSource

Sourcetype 'a format
Sourceval sort : ?on:[ `name | `position ] -> Formats.bam Bistro.file -> Formats.bam Bistro.file
Sourceval indexed_bam_of_sam : Formats.sam Bistro.file -> [ `indexed_bam ] Bistro.directory
Sourceval indexed_bam_of_bam : Formats.bam Bistro.file -> [ `indexed_bam ] Bistro.directory
Sourceval indexed_bam_to_bam : [ `indexed_bam ] Bistro.directory -> Formats.bam Bistro.file
Sourceval bam_of_sam : Formats.sam Bistro.file -> Formats.bam Bistro.file
Sourceval sam_of_bam : Formats.bam Bistro.file -> Formats.sam Bistro.file
Sourceval view : output:'o format -> ?h:bool -> ?_H:bool -> ?q:int -> < file_kind : [ `regular ] ; format : [< `bam | `sam ].. > Bistro.file -> 'o Bistro.file
Sourceval faidx : Formats.fasta Bistro.file -> [ `indexed_fasta ] Bistro.directory
Sourceval fasta_of_indexed_fasta : [ `indexed_fasta ] Bistro.directory -> Formats.fasta Bistro.file
Sourceval flagstat : < Bistro.regular_file_t ; format : [< `bam | `sam ].. > Bistro.file -> Bistro.text Bistro.file
Sourceval rmdup : ?single_end:bool -> [ `indexed_bam ] Bistro.directory -> Formats.bam Bistro.file