package bistro-bio

  1. Overview
  2. Docs
package bistro-bio
Legend:
Library
Module
Module type
Parameter
Class
Class type
val img : Bistro.container_image list
type db = [
  1. | `bacteria
  2. | `proteobacteria
  3. | `rhizobiales
  4. | `betaproteobacteria
  5. | `gammaproteobacteria
  6. | `enterobacteriales
  7. | `deltaepsilonsub
  8. | `actinobacteria
  9. | `cyanobacteria
  10. | `firmicutes
  11. | `clostridia
  12. | `lactobacillales
  13. | `bacillales
  14. | `bacteroidetes
  15. | `spirochaetes
  16. | `tenericutes
  17. | `eukaryota
  18. | `fungi
  19. | `microsporidia
  20. | `dikarya
  21. | `ascomycota
  22. | `pezizomycotina
  23. | `eurotiomycetes
  24. | `sordariomyceta
  25. | `saccharomyceta
  26. | `saccharomycetales
  27. | `basidiomycota
  28. | `metazoa
  29. | `nematoda
  30. | `arthropoda
  31. | `insecta
  32. | `endopterygota
  33. | `hymenoptera
  34. | `diptera
  35. | `vertebrata
  36. | `actinopterygii
  37. | `tetrapoda
  38. | `aves
  39. | `mammalia
  40. | `euarchontoglires
  41. | `laurasiatheria
  42. | `embryophyta
  43. | `protists_ensembl
  44. | `alveolata_stramenophiles_ensembl
]
val busco : ?evalue:float -> ?limit:int -> ?tarzip:bool -> threads:int -> mode:[ `genome | `transcriptome | `proteins ] -> db:db -> Formats.fasta Bistro.file -> [ `busco ] Bistro.directory