package bistro-bio

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package bistro-bio
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val pileup : ?extsize:int -> ?both_direction:bool -> Formats.bam Bistro.file -> Ucsc_gb.bedGraph Bistro.file
type gsize = [
  1. | `hs
  2. | `mm
  3. | `ce
  4. | `dm
  5. | `gsize of int
]
type keep_dup = [
  1. | `all
  2. | `auto
  3. | `int of int
]
type _ format
val bampe : Formats.bam format
val callpeak : ?pvalue:float -> ?qvalue:float -> ?gsize:gsize -> ?call_summits:bool -> ?fix_bimodal:bool -> ?mfold:(int * int) -> ?extsize:int -> ?nomodel:bool -> ?bdg:bool -> ?control:'a Bistro.file list -> ?keep_dup:keep_dup -> 'a format -> 'a Bistro.file list -> [ `macs2_narrow ] Bistro.directory
class type peaks_xls = object ... end
val peaks_xls : [< `macs2_narrow | `macs2_broad ] Bistro.directory -> peaks_xls Bistro.file
class type narrow_peaks = object ... end
val narrow_peaks : [ `macs2_narrow ] Bistro.directory -> narrow_peaks Bistro.file
class type peak_summits = object ... end
val peak_summits : [< `macs2_narrow | `macs2_broad ] Bistro.directory -> peak_summits Bistro.file
val callpeak_broad : ?pvalue:float -> ?qvalue:float -> ?gsize:gsize -> ?call_summits:bool -> ?fix_bimodal:bool -> ?mfold:(int * int) -> ?extsize:int -> ?nomodel:bool -> ?bdg:bool -> ?control:'a Bistro.file list -> ?keep_dup:keep_dup -> 'a format -> 'a Bistro.file list -> [ `macs2_broad ] Bistro.directory
class type broad_peaks = object ... end
val broad_peaks : [ `macs2_broad ] Bistro.directory -> broad_peaks Bistro.file