class type index = object ... endclass type abundance_table = object ... endval img : Bistro.container_image listval index : Formats.fasta Bistro.file list -> index Bistro.fileval quant :
?bias:bool ->
?bootstrap_samples:int ->
?fr_stranded:bool ->
?rf_stranded:bool ->
?threads:int ->
?fragment_length:float ->
?sd:float ->
index Bistro.file ->
fq1:
[ `fq of Formats.fastq Bistro.file
| `fq_gz of Formats.fastq Bistro.gz Bistro.file ] ->
?fq2:
[ `fq of Formats.fastq Bistro.file
| `fq_gz of Formats.fastq Bistro.gz Bistro.file ] ->
unit ->
[ `kallisto ] Bistro.directoryval abundance : [ `kallisto ] Bistro.directory -> abundance_table Bistro.fileval merge_eff_counts :
sample_ids:string list ->
kallisto_outputs:abundance_table Bistro.file list ->
Bistro.tsv Bistro.fileval merge_tpms :
sample_ids:string list ->
kallisto_outputs:abundance_table Bistro.file list ->
Bistro.tsv Bistro.file