package bistro-bio

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package bistro-bio
Legend:
Library
Module
Module type
Parameter
Class
Class type

Parameters

module S : Sample

Signature

val mapped_reads : S.t -> Formats.sam Bistro.file
val mapped_reads_indexed_bam : S.t -> [ `indexed_bam ] Bistro.directory
val mapped_reads_bam : S.t -> Formats.bam Bistro.file
val mapped_reads_nodup : S.t -> Formats.bam Bistro.file
val mapped_reads_nodup_indexed : S.t -> [ `indexed_bam ] Bistro.directory
val coverage : S.t -> Ucsc_gb.bigWig Bistro.file
val counts : no_dups:bool -> feature_type:string -> attribute_type:string -> gff:Formats.gff Bistro.file -> S.t -> [ `featureCounts ] Bistro.directory
val fastq_screen : possible_contaminants:(string * Formats.fasta Bistro.file) list -> S.t -> Bistro.html Bistro.file
val bamstats : S.t -> Bistro.text Bistro.file
val chrstats : S.t -> Bistro.text Bistro.file
val alignment_summary : Bistro.html Bistro.file