val mapped_reads : S.t -> Formats.sam Bistro.fileval mapped_reads_indexed_bam : S.t -> [ `indexed_bam ] Bistro.directoryval mapped_reads_bam : S.t -> Formats.bam Bistro.fileval mapped_reads_nodup : S.t -> Formats.bam Bistro.fileval mapped_reads_nodup_indexed : S.t -> [ `indexed_bam ] Bistro.directoryval coverage : S.t -> Ucsc_gb.bigWig Bistro.fileval counts :
no_dups:bool ->
feature_type:string ->
attribute_type:string ->
gff:Formats.gff Bistro.file ->
S.t ->
[ `featureCounts ] Bistro.directoryval fastq_screen :
possible_contaminants:(string * Formats.fasta Bistro.file) list ->
S.t ->
Bistro.html Bistro.fileval bamstats : S.t -> Bistro.text Bistro.fileval bamstats_alt : S.t -> Biocaml_ez.Bamstats.t Bistro.workflowval chrstats : S.t -> Bistro.text Bistro.fileval alignment_summary : Bistro.html Bistro.file