val phyml :
?bootstrap:int ->
?model:
[< `Blosum62
| `CpREV
| `DCMut
| `Dayhoff
| `F81
| `F84
| `GTR
| `HIVb
| `HIVw
| `HKY85
| `JC69
| `JTT
| `K80
| `LG
| `MtArt
| `MtMam
| `MtREV
| `RtREV
| `TN93
| `VT
| `WAG ] ->
?datatype:[< `AA | `NT ] ->
?f:[< `Empirical | `Model ] ->
?rand_start:bool ->
?n_rand_starts:int ->
?r_seed:int ->
?branch_length:bool ->
?substitution_rate:bool ->
?tree_topology:bool ->
Formats.newick Bistro.file ->
Formats.phylip Bistro.file ->
[ `phyml ] Bistro.directoryval tree : [ `phyml ] Bistro.directory -> Formats.newick Bistro.file