val img : Bistro.container_image listval bed : Formats.bed3 inputval gff : Formats.gff inputmodule Cmd : sig ... endval slop :
?strand:bool ->
?header:bool ->
mode:
[ `both of int
| `left of int
| `right of int
| `both_pct of float
| `left_pct of float
| `right_pct of float ] ->
'a input ->
'a Bistro.file ->
Ucsc_gb.chrom_sizes Bistro.file ->
'a Bistro.fileval intersect :
?ubam:bool ->
?wa:bool ->
?wb:bool ->
?loj:bool ->
?wo:bool ->
?wao:bool ->
?u:bool ->
?c:bool ->
?v:bool ->
?f:float ->
?_F:float ->
?r:bool ->
?e:bool ->
?s:bool ->
?_S:bool ->
?split:bool ->
?sorted:bool ->
?g:Ucsc_gb.chrom_sizes Bistro.file ->
?header:bool ->
?filenames:bool ->
?sortout:bool ->
'a input ->
'a Bistro.file ->
Formats.bed3 Bistro.file list ->
'a Bistro.fileval bamtobed :
?bed12:bool ->
?split:bool ->
?splitD:bool ->
?ed:bool ->
?tag:bool ->
?cigar:bool ->
Formats.bam Bistro.file ->
Formats.bed6 Bistro.fileval closest :
?strand:[ `same | `opposite ] ->
?io:bool ->
?iu:bool ->
?id:bool ->
?fu:bool ->
?fd:bool ->
?ties:[ `all | `first | `last ] ->
?mdb:[ `each | `all ] ->
?k:int ->
?header:bool ->
'a input ->
'a Bistro.file ->
Formats.bed3 Bistro.file list ->
'a Bistro.fileval merge :
?s:bool ->
?_S:[ `minus | `plus ] ->
?d:int ->
?c:int list ->
?o:
[ `absmin
| `collapse
| `count
| `count_distinct
| `distinct
| `max
| `mean
| `median
| `min
| `sum ]
list ->
Formats.bed3 Bistro.file list ->
Formats.bed3 Bistro.file