include sig ... endtype t = Nucleotide.matrixval make : (Nucleotide.t -> Nucleotide.t -> float) -> tval jc69 : unit -> tval gtr :
equilibrium_frequencies:Nucleotide.vector ->
transition_rates:Linear_algebra.vec ->
tval stationary_distribution : t -> Nucleotide.vectorstationary_distribution r numerically computes the asymptotic probability distribution pi of the CTMC defined by r.
val scaled_rate_matrix : Nucleotide.vector -> t -> tscaled_rate_matrix pi r is a new matrix rate such that the corresponding CTMC has one expected transition per unit of time. In addition, if r is symetrical, the result has pi as stationary distribution.
val k80 : float -> t