package phylogenetics

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package phylogenetics
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Module Phylogenetics.MutselSource

https://www.biorxiv.org/content/biorxiv/early/2016/04/30/037689.full.pdf https://academic.oup.com/mbe/article/34/1/204/2656188

Sourcemodule NSCodon_rate_matrix : sig ... end
Sourcetype param = {
  1. nucleotide_rates : Rate_matrix.Nucleotide.t;
  2. nucleotide_stat_dist : Nucleotide.vector;
  3. omega : float;
  4. scaled_fitness : Amino_acid.vector;
  5. gBGC : float;
}
Sourceval random_param : Gsl.Rng.t -> alpha_nucleotide:float -> alpha_fitness:float -> param
Sourceval flat_param : unit -> param
Sourceval rate_matrix : param -> NSCodon_rate_matrix.t
Sourceval stationary_distribution : param -> NSCodon.vector
Sourceval transition_probability_matrix : param -> float -> NSCodon.matrix