package biotk

  1. Overview
  2. Docs
Bioinformatics toolkit

Install 

dune-project
 Dependency

github.com Readme Edit opam file Versions (5)

Authors

  1. P
    Philippe Veber

Maintainers

  1. P
    philippe.veber@gmail.com

Sources

biotk-0.4.tbz
sha256=fb28a30b0d4cfbbab3a09c8c9ba3425bbe0ceb89598060f7666b69d0d353ee02
sha512=19bb3a09d281634e49c9ef69aa2cd9d9f71ae03d6b61d6672c38e835b967d0b07ff8412dd510295fd6c9c0e2f23ac758122c3f588404101203e11f94d4949b08

Description

biotk implements various functionalities in computational biology, like parsers/unparsers for some file formats, a few basic data structures and sequence algorithms, as well as access to some databases.

Published: 08 Mar 2026

README

Biotoolkit library

biotk implements various functionalities in computational biology, like parsers/unparsers for some file formats, a few basic data structures and sequence algorithms, as well as access to some databases.

Installation

Latest release

opam install biotk

Latest commit

opam pin add -y biotk https://github.com/pveber/biotk.git

Dependencies (20)

  1. zlib >= "0.8"
  2. tyxml >= "4.4.0"
  3. vg
  4. uri >= "4.2.0"
  5. rresult >= "0.6.0"
  6. result >= "1.5"
  7. ppx_deriving
  8. ppx_csv_conv
  9. otfm
  10. ocaml >= "4.13.0"
  11. gsl >= "1.25.0"
  12. fmt
  13. crunch >= "3.2.0"
  14. core_unix >= "v0.16.0"
  15. core >= "v0.16.0"
  16. camlzip >= "1.05"
  17. binning
  18. angstrom-unix >= "0.15.0"
  19. angstrom >= "0.15.0"
  20. dune >= "3.6"

Dev Dependencies (3)

  1. odoc with-doc
  2. alcotest with-test
  3. core_bench with-test

Used by (2)

  1. bistro-bio
  2. phylogenetics >= "0.2.0"

Conflicts

None