bio_io 0.4.0 · OCaml Package

val names : string list

val bits : 
  ([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm

val evalue : 
  ([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm

val tend : 
  ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm

val tstart : 
  ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm

val qend : 
  ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm

val qstart : 
  ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm

val gapopen : 
  ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm

val mismatch : 
  ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm

val alnlen : 
  ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm

val fident : 
  ([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm

val target : 
  ([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm

val query : 
  ([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm

val make_creator : 
  query:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      'a ->
      ('b -> Base.string) * 'c) ->
  target:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      'd ->
      ('e -> Base.string) * 'f) ->
  fident:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'g ->
      ('h -> Base.float) * 'i) ->
  alnlen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'j ->
      ('k -> Base.int) * 'l) ->
  mismatch:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'm ->
      ('n -> Base.int) * 'o) ->
  gapopen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'p ->
      ('q -> Base.int) * 'r) ->
  qstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      's ->
      ('t -> Base.int) * 'u) ->
  qend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'v ->
      ('w -> Base.int) * 'x) ->
  tstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'y ->
      ('z -> Base.int) * 'a1) ->
  tend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'b1 ->
      ('c1 -> Base.int) * 'd1) ->
  evalue:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'e1 ->
      ('f1 -> Base.float) * 'g1) ->
  bits:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'h1 ->
      ('i1 -> Base.float) * 'j1) ->
  'k1 ->
  ('l1 -> t) * 'm1

val create : 
  query:Base.string ->
  target:Base.string ->
  fident:Base.float ->
  alnlen:Base.int ->
  mismatch:Base.int ->
  gapopen:Base.int ->
  qstart:Base.int ->
  qend:Base.int ->
  tstart:Base.int ->
  tend:Base.int ->
  evalue:Base.float ->
  bits:Base.float ->
  t

val map : 
  query:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.string) ->
  target:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.string) ->
  fident:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.float) ->
  alnlen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.int) ->
  mismatch:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.int) ->
  gapopen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.int) ->
  qstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.int) ->
  qend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.int) ->
  tstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.int) ->
  tend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.int) ->
  evalue:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.float) ->
  bits:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.float) ->
  t

val iter : 
  query:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  target:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  fident:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  alnlen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  mismatch:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  gapopen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  qstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  qend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  tstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  tend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  evalue:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  bits:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.unit) ->
  Base.unit

val fold : 
  init:'a ->
  query:
    ('b ->
      ([< `Read | `Set_and_create ], t, Base.string)
        Fieldslib.Field.t_with_perm ->
      'c) ->
  target:
    ('d ->
      ([< `Read | `Set_and_create ], t, Base.string)
        Fieldslib.Field.t_with_perm ->
      'e) ->
  fident:
    ('f ->
      ([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'g) ->
  alnlen:
    ('h ->
      ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'i) ->
  mismatch:
    ('j ->
      ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'k) ->
  gapopen:
    ('l ->
      ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'm) ->
  qstart:
    ('n ->
      ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'o) ->
  qend:
    ('p ->
      ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'q) ->
  tstart:
    ('r ->
      ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      's) ->
  tend:
    ('t ->
      ([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'u) ->
  evalue:
    ('v ->
      ([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'w) ->
  bits:
    ('x ->
      ([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'y) ->
  'z

val map_poly : 
  ([< `Read | `Set_and_create ], t, 'a) Fieldslib.Field.user ->
  'b list

val for_all : 
  query:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  target:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  fident:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  alnlen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  mismatch:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  gapopen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  qstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  qend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  tstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  tend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  evalue:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  bits:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  Base.bool

val exists : 
  query:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  target:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  fident:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  alnlen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  mismatch:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  gapopen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  qstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  qend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  tstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  tend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  evalue:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  bits:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      Base.bool) ->
  Base.bool

val to_list : 
  query:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      'a) ->
  target:
    (([< `Read | `Set_and_create ], t, Base.string) Fieldslib.Field.t_with_perm ->
      'b) ->
  fident:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'c) ->
  alnlen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'd) ->
  mismatch:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'e) ->
  gapopen:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'f) ->
  qstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'g) ->
  qend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'h) ->
  tstart:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'i) ->
  tend:
    (([< `Read | `Set_and_create ], t, Base.int) Fieldslib.Field.t_with_perm ->
      'j) ->
  evalue:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'k) ->
  bits:
    (([< `Read | `Set_and_create ], t, Base.float) Fieldslib.Field.t_with_perm ->
      'l) ->
  'm list

module Direct : sig ... end

package bio_io