val tophat1 :
?color:bool ->
Bowtie.index Bistro.Std.workflow ->
[ `single_end of 'a Defs.fastq Bistro.Std.workflow list
| `paired_end of
'a Defs.fastq Bistro.Std.workflow list
* 'a Defs.fastq Bistro.Std.workflow list ] ->
[ `tophat_output ] Bistro.Std.directory Bistro.Std.workflowval tophat2 :
Bowtie2.index Bistro.Std.workflow ->
[ `single_end of 'a Defs.fastq Bistro.Std.workflow list
| `paired_end of
'a Defs.fastq Bistro.Std.workflow list
* 'a Defs.fastq Bistro.Std.workflow list ] ->
[ `tophat_output ] Bistro.Std.directory Bistro.Std.workflowval accepted_hits : ([ `tophat_output ], Defs.bam) Bistro.Std.selectorval junctions : ([ `tophat_output ], Defs.bed6) Bistro.Std.selector