package biotk

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package biotk
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Module Wfa.PSSMSource

include S with type profile := Nucleotide_frequency.t and type score := float and type symbol := Nucleotide.t
Sourcetype expression
Sourcetype automaton
Sourceval disjunction : expression list -> expression
Sourceval sequence : expression list -> expression
Sourceval gap : min_length:int -> max_length:int -> expression
Sourceval min_score : expression -> float
Sourceval max_score : expression -> float
Sourceval scores : expression -> float array
Sourceval automaton : expression -> automaton
Sourceval scan : (char -> Nucleotide.t option) -> automaton -> string -> (int * float * int) Seq.t
Sourceval of_counts : ?prior:float -> int array array -> expression
Sourceval tandem : expression -> expression -> int -> int -> expression