package biotk

  1. Overview
  2. Docs
Bioinformatics toolkit

Install

Dune Dependency

Authors

Maintainers

Sources

biotk-0.3.tbz
sha256=f5e45ddea62d794c6eff134450447f0c7a1dafa7130ae3ed48aaf7f31df68228
sha512=9181202293866e8ef8bc4bc973c0da3fef915d04bfb214b0e98522e979311868dccc8633e651de24ae8c257833ce021001cfae19036c1a5260eeaae27c26e49b

Description

biotk implements various functionalities in computational biology, like parsers/unparsers for some file formats, a few basic data structures and sequence algorithms, as well as access to some databases.

Published: 01 Jul 2024

README

Biotoolkit library

biotk implements various functionalities in computational biology, like parsers/unparsers for some file formats, a few basic data structures and sequence algorithms, as well as access to some databases.

Installation

Latest release

opam install biotk

Latest commit

opam pin add -y biotk https://github.com/pveber/biotk.git

Dependencies (20)

  1. zlib >= "0.6"
  2. tyxml >= "4.4.0"
  3. vg
  4. uri >= "4.2.0"
  5. rresult >= "0.6.0"
  6. result >= "1.5"
  7. ppx_deriving
  8. ppx_csv_conv
  9. otfm
  10. ocaml >= "4.13.0"
  11. gsl
  12. fmt
  13. crunch >= "3.2.0"
  14. core_unix >= "v0.16.0"
  15. core >= "v0.16.0"
  16. camlzip >= "1.05"
  17. binning
  18. angstrom-unix >= "0.15.0"
  19. angstrom >= "0.15.0"
  20. dune >= "3.6"

Dev Dependencies (2)

  1. odoc with-doc
  2. core_bench with-test

Used by (2)

  1. bistro-bio
  2. phylogenetics >= "0.2.0"

Conflicts

None

OCaml

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