package biotk

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biotk
- README
- Library biotk
  - Biotk
    
    Alphabet
    
    S
    
    Make
    
    Amino_acid
    
    Bai
    
    Bam
    
    Header
    
    Alignment0
    
    Bam_iterator
    
    Bamstats
    
    Fragment_length_histogram
    
    Chr_histogram
    
    Bed
    
    Item
    
    S
    
    Item
    
    Bed3
    
    Item
    
    Bed4
    
    Item
    
    Bed5
    
    Item
    
    Bed6
    
    Item
    
    Bgzf
    
    Cisbp
    
    TF_information
    
    Motif
    
    Dataframe
    
    Parser
    
    Ez
    
    Dna_sequence
    
    Parser
    
    Parser_of_char
    
    Encode
    
    Experiment_list
    
    Fasta
    
    Fastq
    
    Stats
    
    FeatureCounts
    
    Tsv
    
    Fields
    
    Direct
    
    Summary
    
    GAnnot
    
    Selection
    
    LSet
    
    LMap
    
    LAssoc
    
    GLoc
    
    Set
    
    Elt
    
    Diff
    
    Provide_of_sexp
    
    Provide_bin_io
    
    Provide_hash
    
    Map
    
    Key
    
    Diff
    
    Provide_of_sexp
    
    Provide_bin_io
    
    Provide_hash
    
    Gcf
    
    Gene
    
    Transcript
    
    Gff
    
    Record
    
    S
    
    Item
    
    GFF2
    
    Item
    
    GFF3
    
    Item
    
    Annotation
    
    ISet
    
    Ibed
    
    Idr
    
    Narrow_output
    
    Row
    
    Broad_output
    
    Row
    
    Igv
    
    Statement
    
    proxy
    
    Interval_tree
    
    Interval_union
    
    Jaspar
    
    Let_syntax
    
    Result
    
    Line
    
    Line_oriented
    
    Parser
    
    Item
    
    S
    
    Make
    
    List1
    
    Macs
    
    Xls
    
    Macs2
    
    Xls
    
    Broad_peaks
    
    Meme
    
    Motif_format
    
    Misc
    
    NarrowPeak
    
    Item
    
    Ncbi_genome
    
    Assembly_summary
    
    Nucleotide
    
    Phred_score
    
    Phylo_tree_draw
    
    Profile_matrix
    
    S
    
    Make
    
    DNA
    
    Protein
    
    Pwm
    
    Pwm_stats
    
    TFM_pvalue
    
    RanT
    
    Range
    
    Sam
    
    Flags
    
    Solexa_score
    
    Ucsc_genome_browser
    
    Chrom_size
    
    Fields
    
    Direct
    
    Utils
    
    Wfa
    
    Symbol
    
    Score
    
    Profile
    
    S
    
    Make
    
    Nucleotide
    
    Nucleotide_frequency
    
    Nucleotide_IUPAC
    
    PSSM
- Library biotk.croquis
  - Biotk_croquis
    
    Croquis
    
    Font
    
    Axis
    
    Viewport
    
    Plot
    
    Colormap
    
    Font_data
    
    Vg_text
- Library biotk.pipes
  - Biotk_pipes
    
    Pipe
    
    Monad
    
    S
    
    Monad_infix
    
    Make
    
    Monad_infix
- Library biotk_pipes_unix
  - Biotk_pipes_unix
    
    Pipe
    
    Monad_infix
- Sources
  - biotk
    
    alphabet.ml
    
    amino_acid.ml
    
    bai.ml
    
    bam.ml
    
    bam_iterator.ml
    
    bamstats.ml
    
    bed.ml
    
    bgzf.ml
    
    biotk.ml
    
    cisbp.ml
    
    dataframe.ml
    
    dna_sequence.ml
    
    encode.ml
    
    fasta.ml
    
    fastq.ml
    
    featureCounts.ml
    
    gAnnot.ml
    
    gLoc.ml
    
    gcf.ml
    
    gene.ml
    
    gff.ml
    
    iSet.ml
    
    ibed.ml
    
    idr.ml
    
    igv.ml
    
    interval_tree.ml
    
    interval_union.ml
    
    jaspar.ml
    
    let_syntax.ml
    
    line.ml
    
    line_oriented.ml
    
    list1.ml
    
    macs.ml
    
    macs2.ml
    
    meme.ml
    
    misc.ml
    
    narrowPeak.ml
    
    ncbi_genome.ml
    
    nucleotide.ml
    
    phred_score.ml
    
    phylo_tree_draw.ml
    
    profile_matrix.ml
    
    pwm.ml
    
    pwm_stats.ml
    
    ranT.ml
    
    range.ml
    
    sam.ml
    
    solexa_score.ml
    
    ucsc_genome_browser.ml
    
    utils.ml
    
    wfa.ml
  - biotk.croquis
    
    biotk_croquis.ml
    
    croquis.ml
  - biotk.pipes
    
    biotk_pipes.ml
    
    pipe.ml
  - biotk_pipes_unix
    
    biotk_pipes_unix.ml
    
    pipe.ml

Legend:
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Module
Module type
Parameter
Class
Class type
Source

Module `Gff.Annotation`Source

Sourcetype t

val of_items : 
  ?gene_id_label:string ->
  ?transcript_id_label:string ->
  item list ->
  t

Sourceval genes : t -> Gene.t Core.String.Table.t * (string * Core.Error.t) list

Sourceval utr3' : t -> Record.t Core.String.Table.t

Sourceval utr5' : t -> Record.t Core.String.Table.t

package biotk

Module Gff.AnnotationSource

Module `Gff.Annotation`Source