Legend:
Library
Module
Module type
Parameter
Class
Class type
Library
Module
Module type
Parameter
Class
Class type
Parsing tab-delimited homology search results (btab, blast-tab, BLAST outfmt 6)
Each query-target alignment (hit) is a single record. See Btab_queries
if you want to treat queries as records.
Here is a small example program.
open! Base
let parse_argv () =
match Sys.get_argv () with
| [| _; file_name |] -> file_name
| _ -> failwith "missing file_name"
let file_name = parse_argv ()
let () =
let open Bio_io.Btab in
In_channel.with_file_iter_records file_name ~f:(fun r ->
Stdio.printf "%s => %s (%.3f)\n" (Record.query r) (Record.target r)
(Record.bits r))
module Record : sig ... end
A record type for Btab (Blast-tab) files
module In_channel : sig ... end
In_channel
for Btab records.