package bio_io

You can search for identifiers within the package.

in-package search v0.2.0

bio_io
- Bio_io
  - Btab
    
    In_channel
    
    Record
    
    Parsed
    
    Fields
    
    Direct
  - Btab_queries
    
    In_channel
    
    T
    
    Record
  - Cigar
  - Fasta
    
    In_channel
    
    Record
  - Fastq
    
    In_channel
    
    Record
  - Private
    
    In_channel
    
    Peekable_in_channel
  - Record_in_channel
    
    In_channel_input_record
    
    Make
    
    M
    
    S
  - Utils

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A fully parsed Btab record.

Sometimes, you may want to fully parse the Btab.Record into an OCaml record, e.g., for s-expression serialization.

Btab.Record is not parsed into an OCaml record by default. Rather, the fields you need are generated on the fly using string indexing. This is a lot faster, but like I mentioned before, sometimes you really do want the whole thing pre-parsed. Use this module in those cases.

type t = {

query : Base.string;
target : Base.string;
pident : Base.float;
alnlen : Base.int;
mismatch : Base.int;
gapopen : Base.int;
qstart : Base.int;
qend : Base.int;
tstart : Base.int;
tend : Base.int;
evalue : Base.float;
bits : Base.float;
qlen : Base.int Base.option;
tlen : Base.int Base.option;

}

include Ppx_compare_lib.Equal.S with type t := t

val equal : t -> t -> bool

val tlen : t -> Base.int Base.option

val qlen : t -> Base.int Base.option

val bits : t -> Base.float

val evalue : t -> Base.float

val tend : t -> Base.int

val tstart : t -> Base.int

val qend : t -> Base.int

val qstart : t -> Base.int

val gapopen : t -> Base.int

val mismatch : t -> Base.int

val alnlen : t -> Base.int

val pident : t -> Base.float

val target : t -> Base.string

val query : t -> Base.string

module Fields : sig ... end

include Sexplib0.Sexpable.S with type t := t

val t_of_sexp : Sexplib0.Sexp.t -> t

val sexp_of_t : t -> Sexplib0.Sexp.t