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package mpi
mpi 1.03
Error log
The package failed to build. The error log from opam follows.
Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y
The following actions will be performed:
- recompile opam-depext 1.2.1-1
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved opam-depext.1.2.1-1 (cached)
-> removed opam-depext.1.2.1-1
-> installed opam-depext.1.2.1-1
Done.
<><> opam-depext.1.2.1-1 installed successfully <><><><><><><><><><><><><><><><>
=> opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead
# Run eval $(opam env) to update the current shell environment
<><> Carrying on to "opam depext -viy mpi.1.03 ocamlfind.1.9.6 conf-pkg-config.3 conf-mpi.1"
You are using opam 2.1+, where external dependency handling has been integrated: consider calling opam directly, the 'depext' plugin interface is provided for backwards compatibility only
# Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian
# The following system packages are needed:
mpi-default-dev
pkg-config
[NOTE] Package ocamlfind is already installed (current version is 1.9.6).
The following actions will be performed:
- install conf-pkg-config 3
- install conf-mpi 1
- install mpi 1.03
===== 3 to install =====
The following system packages will first need to be installed:
mpi-default-dev pkg-config
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Let opam run your package manager to install the required system packages?
(answer 'n' for other options) [Y/n] y
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "mpi-default-dev" "pkg-config"
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- Setting up openmpi-common (4.1.4-3) ...
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- Setting up libcaf-openmpi-3:amd64 (2.10.1-1+b1) ...
- Setting up openmpi-bin (4.1.4-3+b1) ...
- update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
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- Setting up mpi-default-dev (1.14) ...
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Processing 4/9: [conf-pkg-config: pkg-config]
-> retrieved mpi.1.03 (cached)
+ /usr/bin/pkg-config "--help" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-pkg-config.3)
- usage: pkgconf [OPTIONS] [LIBRARIES]
-
- basic options:
-
- --help this message
- --about print pkgconf version and license to stdout
- --version print supported pkg-config version to stdout
- --atleast-pkgconfig-version check whether or not pkgconf is compatible
- with a specified pkg-config version
- --errors-to-stdout print all errors on stdout instead of stderr
- --print-errors ensure all errors are printed
- --short-errors be less verbose about some errors
- --silence-errors explicitly be silent about errors
- --list-all list all known packages
- --list-package-names list all known package names
- --simulate simulate walking the calculated dependency graph
- --no-cache do not cache already seen packages when
- walking the dependency graph
- --log-file=filename write an audit log to a specified file
- --with-path=path adds a directory to the search path
- --define-prefix override the prefix variable with one that is guessed based on
- the location of the .pc file
- --dont-define-prefix do not override the prefix variable under any circumstances
- --prefix-variable=varname sets the name of the variable that pkgconf considers
- to be the package prefix
- --relocate=path relocates a path and exits (mostly for testsuite)
- --dont-relocate-paths disables path relocation support
-
- cross-compilation personality support:
-
- --personality=triplet|filename sets the personality to 'triplet' or a file named 'filename'
- --dump-personality dumps details concerning selected personality
-
- checking specific pkg-config database entries:
-
- --atleast-version require a specific version of a module
- --exact-version require an exact version of a module
- --max-version require a maximum version of a module
- --exists check whether or not a module exists
- --uninstalled check whether or not an uninstalled module will be used
- --no-uninstalled never use uninstalled modules when satisfying dependencies
- --no-provides do not use 'provides' rules to resolve dependencies
- --maximum-traverse-depth maximum allowed depth for dependency graph
- --static be more aggressive when computing dependency graph
- (for static linking)
- --shared use a simplified dependency graph (usually default)
- --pure optimize a static dependency graph as if it were a normal
- dependency graph
- --env-only look only for package entries in PKG_CONFIG_PATH
- --ignore-conflicts ignore 'conflicts' rules in modules
- --validate validate specific .pc files for correctness
-
- querying specific pkg-config database fields:
-
- --define-variable=varname=value define variable 'varname' as 'value'
- --variable=varname print specified variable entry to stdout
- --cflags print required CFLAGS to stdout
- --cflags-only-I print required include-dir CFLAGS to stdout
- --cflags-only-other print required non-include-dir CFLAGS to stdout
- --libs print required linker flags to stdout
- --libs-only-L print required LDPATH linker flags to stdout
- --libs-only-l print required LIBNAME linker flags to stdout
- --libs-only-other print required other linker flags to stdout
- --print-requires print required dependency frameworks to stdout
- --print-requires-private print required dependency frameworks for static
- linking to stdout
- --print-provides print provided dependencies to stdout
- --print-variables print all known variables in module to stdout
- --digraph print entire dependency graph in graphviz 'dot' format
- --keep-system-cflags keep -I/usr/include entries in cflags output
- --keep-system-libs keep -L/lib:/lib/i386-linux-gnu:/lib/x86_64-linux-gnu:/lib/x86_64-linux-gnux32:/lib32:/libx32:/usr/lib:/usr/lib/i386-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnux32:/usr/lib32:/usr/libx32 entries in libs output
- --path show the exact filenames for any matching .pc files
- --modversion print the specified module's version to stdout
- --internal-cflags do not filter 'internal' cflags from output
-
- filtering output:
-
- --msvc-syntax print translatable fragments in MSVC syntax
- --fragment-filter=types filter output fragments to the specified types
-
- report bugs to <https://github.com/pkgconf/pkgconf/issues/new>.
-> compiled conf-pkg-config.3
-> installed conf-pkg-config.3
Processing 6/9: [conf-mpi: sh configure]
+ /usr/bin/sh "configure" "linux" (CWD=/home/opam/.opam/5.1/.opam-switch/build/conf-mpi.1)
-> compiled conf-mpi.1
-> installed conf-mpi.1
[mpi: patch] applying post103.patch
Processing 8/9: [mpi: patch]
Processing 8/9: [mpi: make all]
+ /usr/bin/make "all" "opt" "MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include" "MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib" "MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc" "MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun" (CWD=/home/opam/.opam/5.1/.opam-switch/build/mpi.1.03)
- cc -I`ocamlc -where` -I/usr/lib/x86_64-linux-gnu/openmpi/include -O2 -g -Wall -c -o init.o init.c
- init.c: In function 'caml_mpi_error_handler':
- init.c:37:9: warning: implicit declaration of function 'copy_string'; did you mean 'caml_copy_string'? [-Wimplicit-function-declaration]
- 37 | msg = copy_string(errmsg);
- | ^~~~~~~~~~~
- | caml_copy_string
- init.c:39:18: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
- 39 | caml_mpi_exn = caml_named_value("Mpi.Error");
- | ^
- init.c:41:7: warning: implicit declaration of function 'invalid_argument'; did you mean 'caml_invalid_argument'? [-Wimplicit-function-declaration]
- 41 | invalid_argument("Exception MPI.Error not initialized");
- | ^~~~~~~~~~~~~~~~
- | caml_invalid_argument
- init.c:43:3: warning: implicit declaration of function 'raise_with_arg'; did you mean 'caml_raise_with_arg'? [-Wimplicit-function-declaration]
- 43 | raise_with_arg(*caml_mpi_exn, msg);
- | ^~~~~~~~~~~~~~
- | caml_raise_with_arg
- init.c: In function 'caml_mpi_init':
- init.c:55:10: warning: implicit declaration of function 'stat_alloc' [-Wimplicit-function-declaration]
- 55 | argv = stat_alloc((argc + 1) * sizeof(char *));
- | ^~~~~~~~~~
- init.c:55:8: warning: assignment to 'char **' from 'int' makes pointer from integer without a cast [-Wint-conversion]
- 55 | argv = stat_alloc((argc + 1) * sizeof(char *));
- | ^
- init.c:56:38: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
- 56 | for (i = 0; i < argc; i++) argv[i] = String_val(Field(arguments, i));
- | ^
- init.c:62:12: error: 'MPI_Handler_function' undeclared (first use in this function); did you mean 'MPI_User_function'?
- 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
- | ^~~~~~~~~~~~~~~~~~~~
- | MPI_User_function
- init.c:62:12: note: each undeclared identifier is reported only once for each function it appears in
- init.c:62:34: error: expected expression before ')' token
- 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
- | ^
- init.c:61:3: error: too few arguments to function 'MPI_Comm_create_errhandler'
- 61 | MPI_Comm_create_errhandler(
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~
- In file included from init.c:18:
- /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1377:20: note: declared here
- 1377 | OMPI_DECLSPEC int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function,
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~
- init.c: In function 'caml_mpi_wtime':
- init.c:79:10: warning: implicit declaration of function 'copy_double'; did you mean 'caml_copy_double'? [-Wimplicit-function-declaration]
- 79 | return copy_double(MPI_Wtime());
- | ^~~~~~~~~~~
- | caml_copy_double
- init.c: At top level:
- init.c:30:13: warning: 'caml_mpi_error_handler' defined but not used [-Wunused-function]
- 30 | static void caml_mpi_error_handler(MPI_Comm * comm, int * errcode, ...)
- | ^~~~~~~~~~~~~~~~~~~~~~
- make: *** [<builtin>: init.o] Error 1
[ERROR] The compilation of mpi.1.03 failed at "make all opt MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun".
#=== ERROR while compiling mpi.1.03 ===========================================#
# context 2.1.5 | linux/x86_64 | ocaml-base-compiler.5.1.1 | file:///src
# path ~/.opam/5.1/.opam-switch/build/mpi.1.03
# command /usr/bin/make all opt MPIINCDIR=/usr/lib/x86_64-linux-gnu/openmpi/include MPILIBDIR=/usr/lib/x86_64-linux-gnu/openmpi/lib/lib MPICC=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpicc MPIRUN=/usr/lib/x86_64-linux-gnu/openmpi/lib/bin/mpirun
# exit-code 2
# env-file ~/.opam/log/mpi-113-d98829.env
# output-file ~/.opam/log/mpi-113-d98829.out
### output ###
# cc -I`ocamlc -where` -I/usr/lib/x86_64-linux-gnu/openmpi/include -O2 -g -Wall -c -o init.o init.c
# init.c: In function 'caml_mpi_error_handler':
# init.c:37:9: warning: implicit declaration of function 'copy_string'; did you mean 'caml_copy_string'? [-Wimplicit-function-declaration]
# 37 | msg = copy_string(errmsg);
# | ^~~~~~~~~~~
# | caml_copy_string
# init.c:39:18: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
# 39 | caml_mpi_exn = caml_named_value("Mpi.Error");
# | ^
# init.c:41:7: warning: implicit declaration of function 'invalid_argument'; did you mean 'caml_invalid_argument'? [-Wimplicit-function-declaration]
# 41 | invalid_argument("Exception MPI.Error not initialized");
# | ^~~~~~~~~~~~~~~~
# | caml_invalid_argument
# init.c:43:3: warning: implicit declaration of function 'raise_with_arg'; did you mean 'caml_raise_with_arg'? [-Wimplicit-function-declaration]
# 43 | raise_with_arg(*caml_mpi_exn, msg);
# | ^~~~~~~~~~~~~~
# | caml_raise_with_arg
# init.c: In function 'caml_mpi_init':
# init.c:55:10: warning: implicit declaration of function 'stat_alloc' [-Wimplicit-function-declaration]
# 55 | argv = stat_alloc((argc + 1) * sizeof(char *));
# | ^~~~~~~~~~
# init.c:55:8: warning: assignment to 'char **' from 'int' makes pointer from integer without a cast [-Wint-conversion]
# 55 | argv = stat_alloc((argc + 1) * sizeof(char *));
# | ^
# init.c:56:38: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers]
# 56 | for (i = 0; i < argc; i++) argv[i] = String_val(Field(arguments, i));
# | ^
# init.c:62:12: error: 'MPI_Handler_function' undeclared (first use in this function); did you mean 'MPI_User_function'?
# 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
# | ^~~~~~~~~~~~~~~~~~~~
# | MPI_User_function
# init.c:62:12: note: each undeclared identifier is reported only once for each function it appears in
# init.c:62:34: error: expected expression before ')' token
# 62 | (MPI_Handler_function *)caml_mpi_error_handler, &hdlr);
# | ^
# init.c:61:3: error: too few arguments to function 'MPI_Comm_create_errhandler'
# 61 | MPI_Comm_create_errhandler(
# | ^~~~~~~~~~~~~~~~~~~~~~~~~~
# In file included from init.c:18:
# /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h:1377:20: note: declared here
# 1377 | OMPI_DECLSPEC int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function,
# | ^~~~~~~~~~~~~~~~~~~~~~~~~~
# init.c: In function 'caml_mpi_wtime':
# init.c:79:10: warning: implicit declaration of function 'copy_double'; did you mean 'caml_copy_double'? [-Wimplicit-function-declaration]
# 79 | return copy_double(MPI_Wtime());
# | ^~~~~~~~~~~
# | caml_copy_double
# init.c: At top level:
# init.c:30:13: warning: 'caml_mpi_error_handler' defined but not used [-Wunused-function]
# 30 | static void caml_mpi_error_handler(MPI_Comm * comm, int * errcode, ...)
# | ^~~~~~~~~~~~~~~~~~~~~~
# make: *** [<builtin>: init.o] Error 1
<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build mpi 1.03
+-
+- The following changes have been performed
| - install conf-mpi 1
| - install conf-pkg-config 3
+-
# Run eval $(opam env) to update the current shell environment
The former state can be restored with:
/usr/bin/opam switch import "/home/opam/.opam/5.1/.opam-switch/backup/state-20240129152210.export"
'opam --cli=2.1 install mpi.1.03 ocamlfind.1.9.6 conf-pkg-config.3 conf-mpi.1 --verbose --yes --confirm-level=unsafe-yes' failed.
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