package kappa-library

You can search for identifiers within the package.

in-package search v0.2.0

kappa-library.generic
- Kappa_data_structures
  - Base64
  - Bigbuffer
  - Buffers
    
    Buffers
  - Cache
    
    Cache
    
    O
    
    OO
  - Circular_buffers
  - Color
  - Crc32
  - DynamicArray
    
    DynArray
    
    _
  - ExceptionDefn
  - Fifo
  - Fractions
  - GenArray
    
    GenArray
  - Hashed_list
    
    Hash
    
    Make
    
    A
  - Infinite_buffers
  - IntCollection
  - JsonUtil
  - LargeArray
  - List_util
    
    Infix
  - Loc
  - Mods
    
    CharSetMap
    
    Map
    
    Set
    
    DynArray
    
    Int2SetMap
    
    Map
    
    Set
    
    IntSetMap
    
    Map
    
    Set
    
    String2SetMap
    
    Map
    
    Set
    
    StringSetMap
    
    Map
    
    Set
  - NamedDecls
  - Nbr
  - Operator
    
    DepSet
  - Option_util
  - Pp
  - Pp_html
  - Random_tree
  - Renaming
  - Result_util
  - SetMap
    
    Make
    
    Map
    
    Ord
    
    Set
    
    Map
    
    OrderedType
    
    Proj
    
    A
    
    Map
    
    Set
    
    B
    
    Map
    
    Set
    
    Proj2
    
    A
    
    Map
    
    Set
    
    B
    
    Map
    
    Set
    
    C
    
    Map
    
    Set
    
    Projection
    
    Projection2
    
    S
    
    Map
    
    Set
    
    Set
  - Stop
  - Tools
  - ValMap
kappa-library.mixtures
- Kappa_site_graphs
  - Agent
    
    SetMap
    
    Map
    
    Set
  - Counters_info
  - Edges
  - Navigation
  - Signature
  - Snapshot
  - User_graph
kappa-library.runtime
- Kappa_runtime
  - Counter
    
    Efficiency
  - Data
  - Expr_interpreter
  - Fluxmap
  - Generic_rule_interpreter
    
    Make
    
    Instances
  - Instances
  - Instances_sig
    
    S
  - Replay
  - Resource_strings
  - Roots
  - Rule_interpreter
  - State_interpreter
  - Trace
    
    Simulation_info
kappa-library.terms
- Kappa_terms
  - Alg_expr
  - Alg_expr_extra
  - Configuration
  - Contact_map
  - Instantiation
  - Kappa_printer
  - LKappa
  - Matching
    
    Agent
  - Model
  - Pattern
    
    Env
    
    Map
    
    ObsMap
    
    PreEnv
    
    Set
  - Pattern_compiler
  - Pattern_decompiler
  - Primitives
    
    Transformation
  - Raw_mixture
kappa-library.utils
- Kappa_utils
  - Utils

Legend:
Library
Module
Module type
Parameter
Class
Class type

Elementary rule transformations

type 'a t =

| Agent of 'a
| Freed of 'a Instantiation.site
| Linked of 'a Instantiation.site * 'a Instantiation.site
| NegativeWhatEver of 'a Instantiation.site
| PositiveInternalized of 'a * Instantiation.site_name * Instantiation.internal_state
| NegativeInternalized of 'a Instantiation.site

val map_agent : ('a -> 'b) -> 'a t -> 'b t

val fold_agent : ('a -> 'b -> 'a) -> 'a -> 'b t -> 'a

val map_fold_agent : ('a -> 'b -> 'c * 'b) -> 'a t -> 'b -> 'c t * 'b

val equal : ('a -> 'b -> bool) -> 'a t -> 'b t -> bool

val rename : 
  debug_mode:bool ->
  int ->
  Kappa_data_structures.Renaming.t ->
  Instantiation.abstract t ->
  Instantiation.abstract t

val concretize : 
  debug_mode:bool ->
  (Matching.t * int Kappa_data_structures.Mods.IntMap.t) ->
  Instantiation.abstract t ->
  Instantiation.concrete t

val print : 
  ?sigs:Kappa_site_graphs.Signature.s ->
  Format.formatter ->
  Instantiation.abstract t ->
  unit

val negative_transformations_of_actions : 
  Kappa_site_graphs.Signature.s ->
  (Instantiation.concrete Instantiation.site ->
    Instantiation.concrete Instantiation.site option) ->
  Instantiation.concrete Instantiation.action list ->
  Instantiation.concrete t list

negative_transformation_of_actions signature link_dst actions

val positive_transformations_of_actions : 
  Kappa_site_graphs.Signature.s ->
  Instantiation.concrete Instantiation.site list ->
  Instantiation.concrete Instantiation.action list ->
  Instantiation.concrete t list

positive_transformations_of_actions signature side_effect_dsts actions