package bistro

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A library to build and run distributed workflows

Install

Dune Dependency

Authors

Maintainers

Sources

v0.2.0.tar.gz
md5=43320edd9517b8c93cbe78a45261038d

Description

bistro is an OCaml library to build and run computations represented by a collection of interdependent scripts, as is often found in data analysis (especially computational biology).

Features:

  • build complex and composable workflows declaratively
  • simple and lightweight wrapping of new components
  • resume-on-failure: if something fails, fix it and the workflow will restart from where it stopped
  • parallel workflow execution (locally or over a PBS cluster)
  • development-friendly: when a script is modified, bistro automatically finds out what needs to be recomputed
  • automatic naming of generated files
  • static typing: detect file format errors at compile time!

The library provides a datatype to represent scripts (including metadata and dependencies), an engine to run workflows and a standard library providing components for popular tools (although mostly related to computational biology and unix for now).

Published: 12 May 2017

Dependencies (12)

  1. tyxml >= "4.0"
  2. ppx_deriving
  3. sexplib >= "113.24.00"
  4. rresult
  5. pvem
  6. ppx_tools
  7. ocamlgraph >= "1.8.7"
  8. lwt < "4.0.0"
  9. core < "v0.9.0"
  10. ocamlfind build
  11. oasis build & >= "0.4"
  12. ocaml >= "4.03.0"

Dev Dependencies

None

Used by (1)

  1. bistro-bio

Conflicts

None