package biocaml

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  1. Alignment Types
package biocaml
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Alignment Types

type t = private int

Flags are represented as a "bit map".

include sig ... end
val t_of_sexp : Sexplib.Sexp.t -> t
val sexp_of_t : t -> Sexplib.Sexp.t
val of_int : int -> t Core_kernel.Or_error.t
val has_multiple_segments : t -> bool
val each_segment_properly_aligned : t -> bool
val segment_unmapped : t -> bool
val next_segment_unmapped : t -> bool
val seq_is_reverse_complemented : t -> bool
val next_seq_is_reverse_complemented : t -> bool
val first_segment : t -> bool
val last_segment : t -> bool
val secondary_alignment : t -> bool
val not_passing_quality_controls : t -> bool
val pcr_or_optical_duplicate : t -> bool
val supplementary_alignment : t -> bool
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