package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. B
    biocaml@googlegroups.com

Sources

v0.11.1.tar.gz
md5=e292efa2f61fec33dad63ec897106f59
sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b

doc/biocaml.unix/Biocaml_unix/GenomeMap/Make/LMap/index.html

Module Make.LMapSource

A set of locations with an attached value on each of them

Sourcetype 'a t
Sourceval to_stream : 'a t -> (location * 'a) Stream.t
Sourceval of_stream : (location * 'a) Stream.t -> 'a t
Sourceval intersects : 'a t -> location -> bool

intersects lmap loc returns true if loc has a non-empty intersection with one of the locations in lmap, and returns false otherwise

Sourceval closest : 'a t -> location -> (location * 'a * int) option

closest lmap loc returns the location in lmap that is the closest to loc, along with its annotation and the actual (minimal) distance. Returns None if there is no location in lmap that comes from the same chromosome than loc.

Sourceval intersecting_elems : 'a t -> location -> (location * 'a) Stream.t

intersecting_elems lmap loc returns a stream of elements in lmap whose location intersects with loc.