package phylogenetics

  1. Overview
  2. Docs
Algorithms and datastructures for phylogenetics

Install 

dune-project
 Dependency

github.com Readme Edit opam file Versions (4)

Authors

  1. L
    Louis Duchemin
  2. V
    Vincent Lanore
  3. P
    Philippe Veber

Maintainers

  1. P
    philippe.veber@gmail.com

Sources

phylogenetics-0.3.0.tbz
sha256=de867d7cc017a8e434dab43ef16f0f6495973892cd7b6a8446b18e79393704a8
sha512=0209538caf94be47eabcaa25399c54849bd4fa0fc79e0579acee27f46ef3b72aa50e17bdb48fed8e86674d4caee6c1c4c423833a2757db12e2a6cc28234510de

doc/phylogenetics/Phylogenetics/Sigs/index.html

Module Phylogenetics.SigsSource

Compilation of module signatures used elsewhere.

Sourcetype index = string

Index type for tree leaves and sequences in alignments

Sourcemodule type BASE = sig ... end

Module type for individual bases (eg, A, T, C, G). Mostly conversion to/from strings and ints

Sourcemodule type SEQUENCE = sig ... end

Module type for sequences of bases (eg, DNA).

Sourcemodule type ALIGNMENT = sig ... end

Module type for alignments of sequences (eg, DNA alignment.)

Sourcemodule type EVOL_MODEL = sig ... end

Evolution model with linear algebra functions to compute static distribution and transition matrix diagonalization.