package phylogenetics

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package phylogenetics
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Module Phylogenetics.Nucleotide_processSource

A representation of classical parametric processes on nucleotides

Sourcetype t =
  1. | JC69
  2. | K80 of float
  3. | HKY85 of {
    1. equilibrium_frequencies : Nucleotide.vector;
    2. transition_rate : float;
    3. transversion_rate : float;
    }
  4. | GTR of {
    1. equilibrium_frequencies : Nucleotide.vector;
    2. exchangeabilities : Linear_algebra.vec;
    }
Sourceval rate_matrix : t -> Rate_matrix.Nucleotide.t
Sourceval stationary_distribution : t -> Nucleotide.vector
Sourcemodule Random : sig ... end