package phylogenetics

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package phylogenetics
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Module Phylogenetics.FelsensteinSource

Functions that implement Felsenstein's "pruning" algorithm to compute likelihood of phylogenetic trees with known sequences at leaves.

Sourcemodule type Alignment = sig ... end
Sourcemodule Make (A : Alphabet.S) (Align : Alignment with type base := A.t) (E : Site_evolution_model.S with type mat := A.matrix and type vec := A.vector) : sig ... end