package bistro

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File_formats
Genome databases
NGS utilities
NGS quality
NGS aligners
Genome assembly
Differential analysis
Peak callers

A library to build and run distributed scientific workflows

Install

dune-project

Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/index.html

Module `Bistro_bioinfo`

class type bam = object ... end

class type bed3 = object ... end

class type bed4 = object ... end

class type bed5 = object ... end

class type bed6 = object ... end

class type fasta = object ... end

class type fastq = object ... end

class type sanger_fastq = object ... end

class type solexa_fastq = object ... end

class type phred64_fastq = object ... end

class type gff = object ... end

class type gff2 = object ... end

class type gff3 = object ... end

class type indexed_bam = object ... end

class type sam = object ... end

class type sra = object ... end

File_formats

module Bed : sig ... end

module Fastq : sig ... end

Genome databases

module Ucsc_gb : sig ... end

module Ensembl : sig ... end

NGS utilities

module Bedtools : sig ... end

module Deeptools : sig ... end

module Htseq : sig ... end

module Samtools : sig ... end

module Picardtools : sig ... end

module Sra_toolkit : sig ... end

module Subread : sig ... end

http://subread.sourceforge.net/

NGS quality

module ChIPQC : sig ... end

module FastQC : sig ... end

module Fastq_screen : sig ... end

NGS aligners

module Bowtie : sig ... end

module Bowtie2 : sig ... end

module Tophat : sig ... end

module Hisat2 : sig ... end

module Star : sig ... end

module Kallisto : sig ... end

Genome assembly

module Spades : sig ... end

module Idba : sig ... end

module Cisa : sig ... end

module Quast : sig ... end

Differential analysis

module DESeq2 : sig ... end

Peak callers

module Macs : sig ... end

module Macs2 : sig ... end

module Idr : sig ... end

module Meme_suite : sig ... end

module Prokka : sig ... end

module Srst2 : sig ... end