package biotk

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in-package search v0.2.0

biotk
- Biotk
  - Alphabet
    
    Make
    
    _
    
    S
  - Amino_acid
  - Bai
  - Bam
    
    Alignment0
    
    Header
  - Bam_iterator
  - Bamstats
    
    Chr_histogram
    
    Fragment_length_histogram
  - Bed
    
    Bed3
    
    Item
    
    Bed4
    
    Item
    
    Bed5
    
    Item
    
    Bed6
    
    Item
    
    Item
    
    S
  - Bgzf
  - Cisbp
    
    Motif
    
    TF_information
  - Dataframe
    
    Ez
    
    Parser
  - Dna_sequence
    
    Parser
    
    Parser_of_char
    
    _
  - Encode
    
    Experiment_list
  - Fasta
  - Fastq
    
    Stats
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    Summary
    
    Tsv
    
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  - GAnnot
    
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  - GLoc
    
    Map
    
    Diff
    
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    Provide_hash
    
    Provide_of_sexp
    
    Key
    
    Set
    
    Diff
    
    Elt
    
    Provide_hash
    
    Provide_of_sexp
    
    Elt
  - Gcf
  - Gene
    
    Transcript
  - Gff
    
    Annotation
    
    GFF2
    
    Item
    
    GFF3
    
    Item
    
    Record
    
    S
    
    Item
  - ISet
  - Ibed
  - Idr
    
    Broad_output
    
    Row
    
    Narrow_output
    
    Row
  - Igv
    
    Statement
    
    proxy
  - Interval_tree
  - Interval_union
  - Jaspar
  - Let_syntax
    
    Result
  - Line
  - Line_oriented
    
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    Make
    
    Item
    
    Parser
    
    S
  - List1
  - Macs
    
    Xls
  - Macs2
    
    Broad_peaks
    
    Xls
  - Meme
    
    Motif_format
  - Misc
  - NarrowPeak
    
    Item
  - Ncbi_genome
    
    Assembly_summary
  - Nucleotide
  - Phred_score
  - Phylo_tree_draw
  - Profile_matrix
    
    DNA
    
    Make
    
    _
    
    Protein
    
    S
  - Pwm
  - Pwm_stats
    
    TFM_pvalue
  - RanT
  - Range
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    Flags
  - Solexa_score
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    Chrom_size
    
    Fields
    
    Direct
  - Utils
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    Make
    
    Profile
    
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    Symbol
    
    Nucleotide
    
    Nucleotide_IUPAC
    
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    PSSM
    
    Profile
    
    S
    
    Score
    
    Symbol
biotk.croquis
- Biotk_croquis
  - Croquis
    
    Axis
    
    Colormap
    
    Font
    
    Plot
    
    Viewport
  - Font_data
    
    Internal
  - Vg_text
    
    Font
    
    Layout
biotk.pipes
- Biotk_pipes
  - Pipe
    
    Make
    
    M
    
    Monad_infix
    
    Monad
    
    S
    
    Monad_infix
biotk.pipes.unix
- Biotk_pipes_unix
  - Pipe
    
    Monad_infix

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Line-oriented file formats

This module features a few primitives that may help dealing with file formats that are sequences of items that fit a single line, aka line-oriented formats

val fold : string -> init:'a -> f:('a -> int -> Line.t -> 'a) -> 'a

val fold_err : 
  string ->
  init:'a ->
  f:('a -> int -> Line.t -> ('a, 'b) Stdlib.result) ->
  ('a, 'b) Stdlib.result

module Parser : sig ... end

A parser for lines

module type Item = sig ... end

module type S = sig ... end

module Make (Item : Item) : S with type item = Item.t