package biotk

You can search for identifiers within the package.

in-package search v0.2.0

package biotk

biotk
- Biotk
  - Bai
  - Bam_iterator
  - Bed
    
    Bed3
    
    Record
    
    Bed4
    
    Record
    
    Bed5
    
    Record
    
    Bed6
    
    Record
    
    Record
    
    S
  - Cisbp
    
    Motif
    
    TF_information
  - Dataframe
    
    Ez
    
    Parser
  - Dna_sequence
    
    Parser
    
    Parser_of_char
    
    P
  - Encode
    
    Experiment_list
  - Fasta
  - Fastq
    
    Stats
  - FeatureCounts
    
    Summary
    
    Tsv
    
    Fields
    
    Direct
  - GAnnot
    
    LAssoc
    
    LMap
    
    LSet
    
    Selection
  - GLoc
    
    Map
    
    Key
    
    Provide_hash
    
    Provide_of_sexp
    
    Key
    
    Tree
    
    Provide_of_sexp
    
    K
    
    Set
    
    Elt
    
    Named
    
    Provide_hash
    
    Provide_of_sexp
    
    Elt
    
    Tree
    
    Named
    
    Provide_of_sexp
    
    Elt
  - Gcf
  - Gene
    
    Transcript
  - Gff
    
    Item
    
    Record
  - Gtf
    
    Annotation
    
    Item
    
    Record
  - Idr
    
    Broad_output
    
    Row
    
    Narrow_output
    
    Row
  - Igv
    
    Statement
    
    proxy
  - Interval_union
  - Jaspar
  - Let_syntax
    
    Result
  - Line_oriented
    
    Item
    
    Make
    
    Item
    
    S
  - List1
  - Macs
    
    Xls
  - Macs2
    
    Broad_peaks
    
    Xls
  - Misc
  - NarrowPeak
    
    Item
  - Ncbi_genome
    
    Assembly_summary
  - Nucleotide
  - Phylo_tree_draw
  - Pipe_parsers
    
    Monad_infix
  - Profile_matrix
    
    Alphabet
    
    DNA
    
    Make
    
    A
    
    S
  - Pwm
  - Pwm_stats
    
    TFM_pvalue
  - RanT
  - Range
  - Sam
  - Ucsc_genome_browser
    
    Chrom_size
    
    Fields
    
    Direct
  - Utils
  - Wfa
    
    Make
    
    Profile
    
    Score
    
    Symbol
    
    Nucleotide
    
    Nucleotide_IUPAC
    
    Nucleotide_frequency
    
    PSSM
    
    Profile
    
    S
    
    Score
    
    Symbol
biotk.croquis
- Biotk_croquis
  - Croquis
    
    Font
    
    Layout
    
    Picture
    
    Plot
    
    Scaling
    
    Viewport
  - Font_data
    
    Internal
  - Vg_text
    
    Font
    
    Layout
biotk.pipes
- Biotk_pipes
  - Pipe
    
    Make
    
    M
    
    Monad_infix
    
    Monad
    
    S
    
    Monad_infix
biotk.pipes.unix
- Biotk_pipes_unix
  - Pipe
    
    Monad_infix

Legend:
Library
Module
Module type
Parameter
Class
Class type

XLS output

type item = [

| `Comment of string
| `Record of record
| `Header

]

and record = {

chr : string;
start : int;
end_ : int;
length : int;
abs_summit : int;
pileup : float;
log10pvalue : float;
fold_enrichment : float;
log10qvalue : float;
name : string;

}

val parse_line : 
  Biocaml_base.Line.t ->
  (item, [> `Msg of string ]) Stdlib.result

val read : string -> (item list, [> `Msg of string ]) Stdlib.result

val loc_of_record : record -> GLoc.t