package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

github.com Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. P
    philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.unix/Biocaml_unix/Track/Transform/index.html

Module Track.TransformSource

Low-level transforms.

Sourceval string_to_string_content : ?filename:string -> unit -> (string, ([ t | string content ], [> Error.parsing ]) Core.Result.t) Tfxm.t

Create a parser that gets the "track", comment, and "browser" lines and puts the other lines in `content _.

Sourceval string_content_to_string : ?add_content_new_line:bool -> unit -> ([ t | string content ], string) Tfxm.t

Create a printer for track files containing `content line lines.

Sourceval string_to_wig : ?filename:string -> unit -> (string, ([ t | Wig.item ], [> Error.parsing | Wig.Error.parsing ]) Core.Result.t) Tfxm.t

Create a composite parser for UCSC WIG files.

Sourceval wig_to_string : unit -> ([ t | Wig.item ], string) Tfxm.t

Create a printer for track files containing WIG lines.

Sourceval string_to_gff : ?filename:string -> tags:Gff.Tags.t -> unit -> (string, ([ t | Gff.item ], [> Error.parsing | Gff.Error.parsing ]) Core.Result.t) Tfxm.t

Create a composite parser for UCSC GFF files.

Sourceval gff_to_string : tags:Gff.Tags.t -> unit -> ([ t | Gff.item ], string) Tfxm.t

Create a printer for track files containing GFF lines.

Sourceval string_to_bed : ?filename:string -> ?more_columns:Bed.parsing_spec -> unit -> (string, ([ t | Bed.item content ], [> Error.parsing | Bed.Error.parsing ]) Core.Result.t) Tfxm.t

Create a composite parser for UCSC Bed(Graph) files.

Sourceval bed_to_string : unit -> ([ t | Bed.item content ], string) Tfxm.t

Create a printer for track files containing Bed(Graph) lines.