package biocaml

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The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

github.com Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. P
    philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.unix/Biocaml_unix/Table/Row/index.html

Module Table.RowSource

Definition of rows

Sourcetype item = [
  1. | `int of int
  2. | `float of float
  3. | `string of string
]

Type row elements (or “cells”).

Sourcetype t = item array

A single row.

Sourcetype item_type = [
  1. | `type_int
  2. | `type_float
  3. | `type_string
]

Definition of the type of a cell.

Sourcetype t_type = item_type array

Definition of the type of a row.

Tags

Sourcemodule Tags : sig ... end

Tags describe the actual format of the row stream. See also Tags.t.

Sourcemodule Error : sig ... end
Sourceval of_line : ?separators:char list -> ?strict_row_length:bool -> ?strict_cell_type:bool -> ?format:t_type -> Line.t -> (t, [> Error.line_parsing ]) Core.Result.t

Parse a Line.t into a row while specifying a format.

  • If format is None (the default), then all the elements are put in `string _ rows.
  • The default cell separators are [' '; '\t'].
  • If strict_row_length is true and format provided, then check that the number of columns is at least the one of the format.
  • If strict_cell_type is true and format provided, then check that each cell has the exactly right format.
Sourceval to_line : sep:string -> t -> Line.t

Write the row to a Line.t.

Transform.t Creations

Sourcemodule Transform : sig ... end

S-Expressions

Sourceval item_of_sexp : Sexplib.Sexp.t -> item
Sourceval sexp_of_item : item -> Sexplib.Sexp.t
Sourceval t_of_sexp : Sexplib.Sexp.t -> t
Sourceval sexp_of_t : t -> Sexplib.Sexp.t
Sourceval item_type_of_sexp : Sexplib.Sexp.t -> item_type
Sourceval sexp_of_item_type : item_type -> Sexplib.Sexp.t
Sourceval t_type_of_sexp : Sexplib.Sexp.t -> t_type
Sourceval sexp_of_t_type : t_type -> Sexplib.Sexp.t