package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

github.com Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. P
    philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.unix/Biocaml_unix/Jaspar/index.html

Module Biocaml_unix.JasparSource

Access to Jaspar database

Sourcetype collection =
  1. | Core
  2. | Phylofacts
  3. | CNE
  4. | PBM
  5. | PBM_HOMEO
  6. | PBM_HLH
  7. | FAM
  8. | SPLICE
  9. | POLII

The possible kinds of motifs.

Sourcetype motif = private {
  1. id : string;
  2. jaspar_id : string;
  3. collection : collection;
  4. factor_name : string;
  5. factor_class : string;
  6. family : string option;
  7. comment : string option;
  8. medline : string;
  9. matrix : int array array;
}

A Jaspar motif

Sourceval load : string -> motif list

Loads a database in SQL dump format, as available at Jaspar website