package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

github.com Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. P
    philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.ez/Biocaml_ez/Bamstats/index.html

Module Biocaml_ez.BamstatsSource

include module type of struct include Biocaml_unix.Bamstats end
Sourcetype t = Biocaml_unix.Bamstats.t = {
  1. total : int;
  2. qc_pass : int;
    (*

    not_passing_quality_controls returns false, assumed for all other counts

    *)
  3. single_reads : int;
    (*

    has_multiple_segments returns false

    *)
  4. read_pairs : int;
    (*

    has_multiple_segments and first_segment

    *)
  5. mapped_reads : int;
    (*

    !segment_unmapped and !secondary_alignment and !supplementary_alignment

    *)
  6. mapped_pairs : int;
    (*

    has_multiple_segments and first_segment and each_segment_properly_aligned and !secondary_alignment and !supplementary_alignment

    *)
}
include Sexplib0.Sexpable.S with type t := t
Sourceval t_of_sexp : Sexplib0.Sexp.t -> t
Sourceval sexp_of_t : t -> Sexplib0.Sexp.t
Sourceval zero : t
Sourceval update0 : t -> Biocaml_unix.Bam.Alignment0.t -> t Core.Or_error.t