package biocaml

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The OCaml Bioinformatics Library

Install

dune-project

Dependency

github.com Readme Edit opam file Versions (5)

Authors

Maintainers

P

philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.base/Biocaml_base/Fasta/Parser0/index.html

Module `Fasta.Parser0`Source

Low-level parsing

This module provides a function that can be used to convert a stream of strings (representing consecutive chunks of a FASTA file) into a valid sequence of low-level items (items0). This representation is especially relevant to deal with very long sequences (like chromosome) in constant memory.

Sourcetype state

Sourceval initial_state : ?fmt:fmt -> Base.unit -> state

Source

val step : 
  state ->
  Base.string Base.option ->
  (state * item0 Base.list, [> parser_error ]) Base.Result.t