package biocaml

  1. Overview
  2. Docs
Legend:
Library
Module
Module type
Parameter
Class
Class type

Low-level transforms.

val string_to_string_content : ?filename:string -> unit -> (string, ([ t | string content ], [> Error.parsing ]) Core.Result.t) Tfxm.t

Create a parser that gets the "track", comment, and "browser" lines and puts the other lines in `content _.

val string_content_to_string : ?add_content_new_line:bool -> unit -> ([ t | string content ], string) Tfxm.t

Create a printer for track files containing `content line lines.

val string_to_wig : ?filename:string -> unit -> (string, ([ t | Wig.item ], [> Error.parsing | Wig.Error.parsing ]) Core.Result.t) Tfxm.t

Create a composite parser for UCSC WIG files.

val wig_to_string : unit -> ([ t | Wig.item ], string) Tfxm.t

Create a printer for track files containing WIG lines.

val string_to_gff : ?filename:string -> tags:Gff.Tags.t -> unit -> (string, ([ t | Gff.item ], [> Error.parsing | Gff.Error.parsing ]) Core.Result.t) Tfxm.t

Create a composite parser for UCSC GFF files.

val gff_to_string : tags:Gff.Tags.t -> unit -> ([ t | Gff.item ], string) Tfxm.t

Create a printer for track files containing GFF lines.

val string_to_bed : ?filename:string -> ?more_columns:Bed.parsing_spec -> unit -> (string, ([ t | Bed.item content ], [> Error.parsing | Bed.Error.parsing ]) Core.Result.t) Tfxm.t

Create a composite parser for UCSC Bed(Graph) files.

val bed_to_string : unit -> ([ t | Bed.item content ], string) Tfxm.t

Create a printer for track files containing Bed(Graph) lines.