package biocaml

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The OCaml Bioinformatics Library

Install

dune-project

Dependency

github.com Readme Edit opam file Versions (5)

Authors

Maintainers

P

philippe.veber@gmail.com

Sources

biocaml-0.11.2.tbz

sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d

sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.ez/Biocaml_ez/Fastq/index.html

Module `Biocaml_ez.Fastq`Source

Sourcetype nonrec item = Biocaml_unix.Fastq.item

Sourceval split_name : string -> string * string option

Source

val read : 
  Biocaml_unix.Future_unix.Reader.t ->
  Biocaml_unix.Fastq.item CFStream.Stream.t

Source

val write : 
  Biocaml_unix.Future_unix.Writer.t ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Source

val write_file : 
  ?perm:int ->
  ?append:bool ->
  string ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Sourcemodule Illumina : sig ... end

Sourceval item_to_string : Biocaml_unix.Fastq.item -> string

Sourceval name_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval sequence_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval comment_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Source

val qualities_of_line : 
  ?pos:Biocaml_unix.Pos.t ->
  ?sequence:string ->
  Biocaml_unix.Line.t ->
  string

package biocaml

Install

dune-project Dependency

Authors

Maintainers

Sources

doc/biocaml.ez/Biocaml_ez/Fastq/index.html

Module Biocaml_ez.FastqSource

dune-project
Dependency

Module `Biocaml_ez.Fastq`Source