package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. B
    biocaml@googlegroups.com

Sources

v0.11.0.tar.gz
md5=486aeb3e552dabae85839e2af30d6c52
sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

doc/biocaml.unix/Biocaml_unix/MzData/index.html

Module Biocaml_unix.MzDataSource

Read mzData files (mass spectrometry data format).

Vectors of 64 bits floats.

Vectors of OCaml ints.

Sourcemodule Precursor : sig ... end
Sourcetype spectrum = {
  1. id : int;
    (*

    index of the spectrum in the file (starting with 1).

    *)
  2. mslevel : int;
    (*

    1: MS, 2: MS/MS,...

    *)
  3. precursor : Precursor.t list;
    (*

    List of precursors to the spectrum currently being described.

    *)
  4. mz : vec;
    (*

    m/z

    *)
  5. int : vec;
    (*

    intensities

    *)
  6. sup : (string * vec) list;
    (*

    Supplemental (name, arrays), if any

    *)
}

Individual mass spectrum.

Sourceval of_file : string -> spectrum list

of_file fname returns the spectra contained in the file fname.