package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. B
    biocaml@googlegroups.com

Sources

v0.11.0.tar.gz
md5=486aeb3e552dabae85839e2af30d6c52
sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

doc/biocaml.ez/Biocaml_ez/Fastq/Illumina/index.html

Module Fastq.IlluminaSource

include module type of struct include Biocaml_unix.Fastq.Illumina end
Sourcetype surface = [
  1. | `Top
  2. | `Bottom
]
Sourcetype tile = private Biocaml_unix.Fastq.Illumina.tile = {
  1. surface : surface;
  2. swath : int;
    (*

    1, 2, or 3

    *)
  3. number : int;
    (*

    1 - 99, but usually 1 - 8

    *)
}
Sourceval tile_to_string : tile -> string

Inverse of tile_of_string.

Sourcetype sequence_id = private Biocaml_unix.Fastq.Illumina.sequence_id = {
  1. instrument : string;
  2. run_number : int;
  3. flowcell_id : string;
  4. lane : int;
  5. tile : tile;
  6. x_pos : int;
  7. y_pos : int;
  8. read : int;
  9. is_filtered : bool;
  10. control_number : int;
  11. index : string;
}

Content of name lines as generated by Casava versions >= 1.8.

Sourceval tile_of_string : string -> tile
Sourceval sequence_id_of_string : string -> sequence_id