package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. B
    biocaml@googlegroups.com

Sources

v0.10.1.tar.gz
md5=4cf944bcae5d36bf47b67f6bcb2455d7
sha512=0262b5768aefd7c080f664c46c88876fce9a658cc6a87358a77b7112c49ae3042e7ab542e76be5738fbaeda853149b308b48d4897960b5c7ae3b4da71d978bd8

doc/biocaml.unix/Biocaml_unix/Jaspar/index.html

Module Biocaml_unix.Jaspar

Access to Jaspar database

type collection =
  1. | Core
  2. | Phylofacts
  3. | CNE
  4. | PBM
  5. | PBM_HOMEO
  6. | PBM_HLH
  7. | FAM
  8. | SPLICE
  9. | POLII

The possible kinds of motifs.

type motif = private {
  1. id : string;
  2. jaspar_id : string;
  3. collection : collection;
  4. factor_name : string;
  5. factor_class : string;
  6. family : string option;
  7. comment : string option;
  8. medline : string;
  9. matrix : int array array;
}

A Jaspar motif

val load : string -> motif list

Loads a database in SQL dump format, as available at Jaspar website