package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. B
    biocaml@googlegroups.com

Sources

v0.10.1.tar.gz
md5=4cf944bcae5d36bf47b67f6bcb2455d7
sha512=0262b5768aefd7c080f664c46c88876fce9a658cc6a87358a77b7112c49ae3042e7ab542e76be5738fbaeda853149b308b48d4897960b5c7ae3b4da71d978bd8

doc/biocaml.base/Biocaml_base/Ucsc_genome_browser/index.html

Module Biocaml_base.Ucsc_genome_browser

type assembly = [
  1. | `dm3
  2. | `droSim1
  3. | `hg18
  4. | `hg19
  5. | `hg38
  6. | `mm8
  7. | `mm9
  8. | `mm10
  9. | `sacCer2
]
val string_of_assembly : [< assembly ] -> Base.string
type track_attribute = [
  1. | `name of Base.string
  2. | `description of Base.string
  3. | `type_ of track_type
  4. | `visibility of [ `hide | `full | `dense | `pack | `squish ]
  5. | `color of color
  6. | `itemRgb of Base.bool
  7. | `colorByStrand of color * color
  8. | `useScore of Base.bool
  9. | `group of Base.string
  10. | `priority of Base.int
  11. | `db of assembly
  12. | `offset of Base.int
  13. | `maxItems of Base.int
  14. | `url of Base.string
  15. | `htmlUrl of Base.string
  16. | `bigDataUrl of Base.string
]
and color = Base.int * Base.int * Base.int
and track_type = [
  1. | `bam
  2. | `bedDetail
  3. | `bedGraph
  4. | `bigBed
  5. | `bigWig
  6. | `broadPeak
  7. | `narrowPeak
  8. | `array
  9. | `vcf
  10. | `wig
]
type url_param = [
  1. | `pix of Base.int
  2. | `hgt_labelWidth of Base.int
  3. | `textSize of Base.int
]
val custom_track_url : ?params:url_param Base.list -> db:[< assembly ] -> position:(Base.string * (Base.int * Base.int) Base.option) -> data_url:Base.string -> Base.unit -> Base.string
val bigData_custom_track_url : ?params:url_param Base.list -> db:[< assembly ] -> position:(Base.string * (Base.int * Base.int) Base.option) -> track:track_attribute Base.list -> Base.unit -> Base.string