package biocaml

  1. Overview
  2. Docs
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. B
    biocaml@googlegroups.com

Sources

v0.10.0.tar.gz
md5=497e3f2f7128a6ca347d66848da38a3d
sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

doc/biocaml.unix/Biocaml_unix/Wig/Error/index.html

Module Wig.Error

The errors of the Wig module.

type parsing = [
  1. | `cannot_parse_key_values of Pos.t * string
  2. | `empty_line of Pos.t
  3. | `incomplete_input of Pos.t * string list * string option
  4. | `missing_chrom_value of Pos.t * string
  5. | `missing_start_value of Pos.t * string
  6. | `missing_step_value of Pos.t * string
  7. | `wrong_start_value of Pos.t * string
  8. | `wrong_step_value of Pos.t * string
  9. | `unrecognizable_line of Pos.t * string list
  10. | `wrong_bed_graph_value of Pos.t * string
  11. | `wrong_fixed_step_value of Pos.t * string
  12. | `wrong_span_value of Pos.t * string
  13. | `wrong_variable_step_value of Pos.t * string
]

The parsing errors.

val parsing_error_to_string : parsing -> string

Convert a parsing error to a string.

type to_bed_graph = [
  1. | `not_in_variable_step_state
  2. | `not_in_fixed_step_state
]

The errors encountered while transforming item values to bed-graph-only values.

type t = [
  1. | parsing
  2. | to_bed_graph
]

The union of all errors.

val parsing_of_sexp : Sexplib.Sexp.t -> parsing
val sexp_of_parsing : parsing -> Sexplib.Sexp.t
val t_of_sexp : Sexplib.Sexp.t -> t
val sexp_of_t : t -> Sexplib.Sexp.t
val to_bed_graph_of_sexp : Sexplib.Sexp.t -> to_bed_graph
val sexp_of_to_bed_graph : to_bed_graph -> Sexplib.Sexp.t