package biocaml

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  1. Alignment Types
The OCaml Bioinformatics Library

Install 

dune-project
 Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

  1. S
    Sebastien Mondet
  2. A
    Ashish Agarwal
  3. P
    Philippe Veber
  4. C
    Christophe Troestler
  5. S
    Sergei Lebedev
  6. D
    David Koppstein
  7. A
    Alexander Gryzlov
  8. F
    Francois Berenger

Maintainers

  1. B
    biocaml@googlegroups.com

Sources

v0.10.0.tar.gz
md5=497e3f2f7128a6ca347d66848da38a3d
sha512=4a76ebbafda3bc944afaff40d69791dfe153a0638ef5d7e6e1bc962b7f991d9545cd0af2d7930b39f8b31dbf067d0603cfa03d9b7a49396ab1ae452df47fd1f3

doc/biocaml.unix/Biocaml_unix/Sam/Flags/index.html

Module Sam.Flags

Alignment Types

type t = private int

Flags are represented as a "bit map".

include Ppx_sexp_conv_lib.Sexpable.S with type t := t
val t_of_sexp : Sexplib0.Sexp.t -> t
val sexp_of_t : t -> Sexplib0.Sexp.t
val of_int : int -> t Core_kernel.Or_error.t
val has_multiple_segments : t -> bool
val each_segment_properly_aligned : t -> bool
val segment_unmapped : t -> bool
val next_segment_unmapped : t -> bool
val seq_is_reverse_complemented : t -> bool
val next_seq_is_reverse_complemented : t -> bool
val first_segment : t -> bool
val last_segment : t -> bool
val secondary_alignment : t -> bool
val not_passing_quality_controls : t -> bool
val pcr_or_optical_duplicate : t -> bool
val supplementary_alignment : t -> bool