package bio_io

Unreleased

0.4.0 (2021-12-19)

Fixed

• [Fasta.In_channel] can now read from fifos...e.g., you can pipe the output of gunzip -cdirectly into a program using the fasta parser and it will be okay.

Added

• Added modules for MMseqs2 and BLAST (e.g., BLAST 6 tab-delimited output)

• Added a couple of example programs in the examples directory

Changed

• Fasta_in_channel is now Fasta.In_channel (breaking change)

• Fasta_record is now Fasta.Record (breaking change)

• Various non-breaking changes

0.3.0 (2021-09-26)

• Add Cigar module for parsing CIGAR strings.

0.2.1 (2021-09-12)

• Specify ppx_expect and ppx_inline_test as test dependencies rather than dev dependencies.

0.2.0 (2021-09-11)

• Require Base rather than Core_kernel

• Add seq_length and to_string_nl functions to Fasta_record module

0.1.2 (2021-08-04)

• Added some benchmarks.

• Sped up fasta parsing.

0.1.1 (2021-05-15)

• Fixed the OCaml min. dependency to 4.08.

• Fixed the lint errors in the opam-ci

0.1.0 (2021-05-14)

Initial release!