package phylogenetics

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package phylogenetics
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Module Site_evolution_model.K80Source

K80 model with analytical diagonalization of transition matrix (parametrized by kappa)

include S with type vec := Nucleotide.vector with type mat := Nucleotide.matrix with type param = float
Sourcetype param = float
Sourceval rate_matrix : param -> Nucleotide.matrix
Sourceval transition_probability_matrix : param -> float -> Nucleotide.matrix
Sourceval stationary_distribution : param -> Nucleotide.vector